Publications

You can find the most updated list of my publications on my google scholar page (here).

Selected Publications (Full text):

	Hamid Nikbakht, Jessa S., et al. “Latency and Interval Therapy Affect the Evolution in Metastatic Colorectal Cancer” Scientific Reports (2020)
	Ashot S Harutyunyan, …, Hamid Nikbakht, et al. “Take a Step Down and Beware of H3K36me2: The H3K27m Mutation in Glioma Directs H3K27 Methylation”. Cell Reports (2020)
	DN Weinberg, …, Nikbakht H., et al. The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape. Nature (2019)
	Ashot Harutyunyan,… Nikbakht H., et al. H3K27M induces defective chromatin spread of PRC2-mediated repressive H3K27me2/me3 and is essential for glioma tumorigenesis.  Nature Communications (2019)
	Meaghan Boileau,… Nikbakht H., et al. Mutated H3 Histones Drive Human Pre-Leukemic Hematopoietic Stem Cell Expansion And Promote Leukemic Aggressiveness,  Nature communications (2019)
	Tenzin Gayden,…. Hamid Nikbakht,..et al. Germline HAVCR2 mutations altering TIM-3 characterize subcutaneous panniculitis-like T cell lymphomas with hemophagocytic lymphohistiocytic syndrome.  Nature Genetics (2018)
	Tenzin Gayden,…,Nikbakht H., et al. Germline TIM-3 mutations characterize sub-cutaneous panniculitis-like T-cell lymphomas with hemophagocytic lymphohistiocytic syndrome. Blood (2018)
	Carolina Gomes,….Nikbakht H., TRPV4, KRAS and FGFR1 gain-of-function mutations drive giant cell lesions of the jaw. Nature Communications (2018)
	Elvis terci Valera,…, Nikbakht H., et al. Methylome analysis and whole exome sequencing reveals that brain tumors associated with encephalocraniocutaneous lipomatosis are midline pilocytic astrocytomas. Acta Neuropathologica (2018)
	Morrissy, A.S., ……..,Nikbakht H., et al.. Spatial heterogeneity in medulloblastoma. Nature Genetics (2017)
	Alan Mackay,… Nikbakht H., et al. Integrated molecular meta-analysis of 1000 paediatric high grade and diffuse intrinsic pontine glioma Cancer Cell (2017)
	Ralph Salloum,…, Nikbakht H., et al., Characterizing temporal genomic heterogeneity in pediatric high-grade gliomas, Acta Neuropathologica Communications (2017).
	Fiset, P.O.,…, Nikbakht, H., Majewski, J., Jabado, N. and Albrecht, S. Longitudinal mutational analysis of a cerebellar pilocytic astrocytoma recurring as a ganglioglioma. Pediatric blood & cancer (2017)
	Hamid Nikbakht, et al.  Spatial and temporal homogeneity of driver mutations in diffuse intrinsic pontine glioma. Nature Communications (2016)
	Hamid Nikbakht, Xuhua Xia, and Donal A. Hickey. The evolution of genomic GC content undergoes a rapid reversal within the genus Plasmodium. Genome (2015)
	Fontebasso AM, …, Nikbakht H., et al. Recurrent somatic mutations in ACVR1 in pediatric midline high-grade astrocytoma. Nature Genetics (2014)
	Adam M. Fontebasso, …, Nikbakht, H., et al., Epigenetic dysregulation: a novel pathway of oncogenesis in pediatric brain tumors. Acta Neuropathologica (2014)
	Kahle, K. T., Merner, N. D., Friedel, P., Silayeva, L., Liang, B., Khanna, A., …Nikbakht, H., …, & Rouleau, G. A. Genetically encoded impairment of neuronal KCC2 cotransporter function in human idiopathic generalized epilepsy. EMBO Reports (2014)
	Shokralla, S., Gibson, J. F., Nikbakht, H., Janzen, D. H., Hallwachs, W., & Hajibabaei, M. Next?generation DNA barcoding: using next?generation sequencing to enhance and accelerate DNA barcode capture from single specimens. Molecular Ecology Resources (2014)
	(co-first author) Albu, Mihai*., Hamid Nikbakht,*, D. A. Hickey. “DNA Barcode Linker”, Molecular Ecology Resources (2010).
	M. Kazemian, B. Moshiri, H. Nikbakht, V. Palade, C. Lucas. “Using Classifier Fusion Techniques for Protein Secondary Structure Prediction”, International Journal of Computational Intelligence in Bioinformatics and Systems Biology (2010)
	M. Kazemian, B. Moshiri, H. Nikbakht, C. Lucas. A New Expertness Index for Assessment of Secondary Structure Prediction Engines, Journal of Computational Biology and Chemistry (2007)
	M. Kazemian, B. Moshiri, H. Nikbakht, C. Lucas. Architecture for Biological Database Integration, Special Issue on AI & Specific Applications, ICGST International Journal on Artificial Intelligence and Machine Learning (2006)
	M. Kazemian, B. Moshiri, H. Nikbakht, C. Lucas. Dempster Shafer based Fusion of Protein Secondary Structure, International Conference on Machine Intelligence IEEE conference, Tozeur, Tunisia, 5-7 November (2005)
Book Chapter:
	M. Kazemian, B. Moshiri, H. Nikbakht, C. Lucas. Protein Secondary Structure Classifiers Fusion using OWA, Lecture Notes in Computer Science (2015) Springer-Verlag Berlin Heidelberg.